Computational Anatomy & Visualization: Publications

Peer-reviewed Papers | Bookchapters and Proceedings Papers | Abstracts

Published, in Press, and Submitted Peer-reviewed Papers

Boesen K, Rehm K, Schaper K, Stoltzner S, Woods R, Lüders E, Rottenberg D. Quantitative comparison of four brain extraction algorithms. NeuroImage 22(3): 1255-1261, 2004.. [PubMed reference]

Gardner D, Toga AW, Ascoli GA, Beatty J, Brinkley JF, Dale AM, Fox PT, Gardner EP, George JS, Goddard N, Harris KM, Herscovits EH, Hines M, Jacobs GA, Jacobs RE, Jones EG, Kennedy DN, Kimberg DY, Mazziotta JC, Miller P, Mori S, Mountain DC, Reiss AL, Rosen GD, Rottenberg DA, Shepherd GM, Smalheiser NR, Smith KP, Strachan T, Van Essen DC, Williams RW, Wong STC. Towards effective and rewarding data sharing. Neuroinformatics 1:289-296, 2003.[PubMed reference]

Hurdal MK and Stephenson K. Cortical cartography using the discrete conformal approach of circle packings. NeuroImage, in press.

Ratnanather JT, Barta PE, Honeycutt NA, Lee G, Morris HM, Dziorny AC, Hurdal MK, Pearlson GD, Miller MI. Dynamic programming generation of boundaries of local coordinatized submanifolds in the neocortex: application to the planum temporale. NeuroImage 20:359-377, 2003. [PubMed reference]

Rehm K, Schaper K, Anderson J, Woods R, Stoltzner S, Rottenberg D. Putting our heads together: a consensus approach to brain/non-brain segmentation in T1-weighted MR volumes. NeuroImage 22(3): 1262-1270, 2004. [PubMed reference]

Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stolzner SE, Rottenberg DA, Toga AW. A meta-algorithm for brain extraction in MRI. NeuroImage, in press.

Sidtis JJ, Strother SC, Rottenberg DA. Predicting performance from functional imaging data: methods matter. NeuroImage 20:615-624, 2003.. [PubMed reference]

Sidtis JJ, Strother SC, Rottenberg DA. The effect of set on the resting state in functional neuroimaging: a role for the striatum? NeuroImage, 22:1407-1413, 2004. [PubMed reference]

Strother S, LaConte S, Hansen LK, Anderson J, Zhang J, Pulapura S, Rottenberg D. Optimizing the fMRI data-processing pipeline using prediction and reproducibility performance metrics. NeuroImage, in press.

Woods RP. Multitracer: a Java-based tool for anatomic delineation of grayscale volumetric images. NeuroImage 19(4):1829-34, 2003. [PubMed reference]

Bookchapters and Proceedings Papers

Bowers PL and Hurdal MK. Planar Conformal Mappings of Piecewise Flat Surfaces. In H.-C. Hege and K. Polthier (eds), Visualization and Mathematics III, Berlin, Springer Verlag, pp. 3-34, 2003.

Ju L, Stern J, Rehm K, Schaper K, Hurdal M, Rottenberg D. Cortical surface flattening using least square conformal mapping with minimal metric distortion. Proceedings of the 2004 IEEE Symposium on Biomedical Imaging, pp. 77-80.

Lange O, Meyer-Baese A, Wismueller A, Hurdal M, Sumners DW, Auer D. Tree-dependent and topographic independent component analysis for functional MRI analysis. Proceedings of SPIE, Volume 5439, 2004.

Lange O, Meyer-Baese A, Wismueller A, Hurdal M, Sumners DW, Auer D. Model-free functional MRI analysis using improved fuzzy cluster analysis techniques. Proceedings of SPIE, Volume 5421, 2004.

Thomas D. Otto, Anke Meyer-Baese, Monica Hurdal, De Witt Sumners, Axel Wismuller and Dorothee Auer, Model-Free Functional MRI Analysis Using Transformation-Based Methods, in A. J. Bell, M. V. Wickerhauser and H. H. Szu (eds), Independent Component Analysis, Wavelets, and Neural Networks, Proceedings of SPIE, Volume 5102, pp. 156-167, 2003.

Thomas D. Otto, Anke Meyer-Baese, Monica Hurdal, De Witt Sumners, Axel Wismueller and Dorothee Auer, Model-Free Functional MRI Analysis Using Cluster-Based Methods, in K. L. Priddy and P. J. Angeline (eds), Intelligent Computing: Theory and Applications, Proceedings of SPIE, Volume 5103, pp. 17-24, 2003.

Abstracts

Hurdal MK, Lee A, Ratnanather JT, Nishino T, Miller MI, Botteron K. Investigating the medial prefrontal cortex with cortical flat mappings. NeuroImage 19, CD-Rom Abstract Z#856, 2003.

Hurdal MK. Automated topological correction of cortical surfaces. NeuroImage 22 CD-ROM Abstract #1404, 2004.

Ju L, Shao Y, Stern J, Rehm K, Schaper K, Hurdal M, Rottenberg D. Cortical surface flattening using discrete conformal mapping with minimal metric distortion. NeuroImage 19, CD-ROM Abstract #864, 2003.

Kurtz KW, Hurdal MK, Banks DC. Visualization tools for interacting with quasi-conformal flat maps of the human brain. NeuroImage 19, CD-ROM Abstract #872, 2003.

Lee N, Ratnanather JT, Barta P, Hurdal MK, Miller MI. Dynamic programming definition of boundaries of the planum temporale. NeuroImage 19, CD-ROM Abstract #875, 2003.

Ju L, Hurdal MK, Rehm K, Wood B, Schaper K, Stern J, Rottenberg D. Evaluation of three cortical surface flattening methods. NeuroImage 22 CD-ROM Abstract #1422, 2004.

Rehm K, Strother SC, Anderson JR, Woods RP, Rottenberg DA. Multi-variate analysis: a tool for examining influences of mask and polynomial order on non-linear registration of T1-MRI volumes. NeuroImage 22 CD-ROM Abstract #661, 2004.

Rehm K, Ju L, Stern J, Schaper K, Rottenberg DA. ParcelMan and Pigment: interactive tools for parcellation of cortical grey matter. NeuroImage 22 CD-ROM Abstract #177, 2004.

Schaper KA, Jarvis TR, Boesen K, Rehm K, Gati J, Menon R, Rottenberg DA. Quantitative evaluation of MRI brain segmentation algorithms. NeuroImage 22 CD-ROM Abstract #1567, 2004.