INC Publications: Year 7

Bowers PL, Hurdal MK. Planar conformal mappings and piecewise flat surfaces. In H.-C. Hege and K. Polthier (eds), Visualization and Mathematics III, Berlin, Springer Verlag, pp. 3-34, 2003.

Cohen ER, Ugurbil K, Kim S-G. Effect of basal conditions on the magnitude and dynamics of the BOLD fMRI response. J Cereb Blood Flow Metabol 22:1042-1053, 2002. [PubMed reference]

Gardner D, Toga AW, Ascoli GA, Beatty J, Brinkley JF, Dale AM, Fox PT, Gardner EP, George JS, Goddard N, Harris KM, Herscovits EH, Hines M, Jacobs GA, Jacobs RE, Jones EG, Kennedy DN, Kimberg DY, Mazziotta JC, Miller P, Mori S, Mountain DC, Reiss AL, Rosen GD, Rottenberg DA, Shepherd GM, Smalheiser NR, Smith KP, Strachan T, Van Essen DC, Williams RW, Wong STC. Towards effective and rewarding data sharing. Neuroinformatics 1:289-295, 2003. [PubMed reference]

Harel N, Lee S-P, Nagaoka T, Kim D-S, Kim S-G. Origin of negative blood oxygenation level dependent fMRI signals. J Cereb Blood Flow Metabol 22:908-917, 2002. [PubMed reference]

Kim S-G, Ogawa S. Insights into new techniques for high resolution functional MRI. Current Opinion in Neurobiology 12:607-615, 2002. [PubMed reference]

Kim S-G. Progress in understanding functional imaging signals. Proc Natl Acad Sci USA 100:3550-3552, 2003. [PubMed reference]

LaConte S, Anderson J, Muley S, Frutiger S, Hansen LK, Yacoub E, Xiaoping H, Rottenberg D, Ashe J, Strother SC. The evaluation of preprocessing choices in single-subject BOLD-fMRI studies using data-driven performance metrics. Neurolmage 18:10-27, 2003. [PubMed reference]

McKeown MJ, Hansen LK, Sejnowski TJ. Independent component analysis of functional MRI: what is signal and what is noise? C. Opinion Neurobiology 13:1-10, 2003. [PubMed reference]

Nielsen FA, Hansen LK. Finding related functional neuroimaging volumes. Artificial Intelligence in Medicine 30(2) 141-151, 2004. [PubMed reference]

Shaw ME, Strother SC, Gavrilescu M, Podzebenko K, Waites A, Watson J, Anderson J, Jackson G, Egan G. Evaluating subject specific preprocessing choices in multi-subject BOLD fMRI data sets using data driven performance metrics. Neurolmage 19(3):988-1001, 2003. [PubMed reference]

Stancak A, Cohen ER, Seidler RD, Doung TQ, Kim S-G. The size of corpus callosum correlates with functional activation of medial motor cortical areas in bimanual and unimanual movements. Cerebral Cortex 13:475-485, 2003. [PubMed reference]

Strother SC. A developer's commentary on Fiswidgets. Neuroinformatics 1:131-134, 2003 (invited commentary). [PubMed reference]

Woods RP. Characterizing volume and surface deformations in an atlas framework: theory, applications and implementation. NeuroImage 18:769-788, 2003. [PubMed reference]

Woods R. Multitracer: a Java-based tool for anatomic delineation of grayscale volumetric images. NeuroImage 19(4):1829-1834, 2003. [PubMed reference]

Book Chapters and Refereed Proceedings Papers

Lukic AS, Wernick MN, Hanson LK, Anderson J, Strother SC. An ICA algorithm for analyzing multiple data sets. Proceedings of the IEEE International Conference on Image Processing vol. 2, pp 821-824, 2002.

Abstracts

Boesen K, Rehm K, Schaper K, Stoltzner S, Woods R, Rottenberg D. Quantitative comparison of three brain extraction algorithms [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]

Hansen LK. ICA of fMRI based on a convolutive mixture model. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2.

Hurdal MK, Lee A, Ratnanather JT, Nishino T, Miller MI, Botteron K. Investigating the medial prefrontal cortex with cortical flat mappings [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]

Ju L, Shao Y, Stern J, Rehm K, Schaper K, Hurdal M, Rottenberg D. Cortical surface flattening using discrete conformal mapping with minimal metric distortion [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]

Kurtz KW, Hurdal MK, Banks DC. Visualization tools for interacting with quasi-conformal flat maps of the human brain [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]

LaConte S, Strother SC, Cherkassky V, Hu X. Predicting motor tasks in fMRI data with support vector machines. ISMRM, May 2003, Toronto (abstract).

Lee N, Ratnanather JT, Barta P, Hurdal MK, Miller MI. Dynamic programming definition of boundaries of the planum temporale [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]

Rehm K, Anderson J, Woods R, Rottenberg D. Inter-subject spatial registration of the human cerebellum [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]

Schaper K, Rehm K, Stern J, Rottenberg D. Recent trends in MRI brain-tissue segmentation [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]

Shaw M, Waites AB, Strother SC. Evaluating functional neuroimaging results: A comparison of ROC methods and data-driven performance metrics [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]

Stern J. Edge-inferenced contrast enhancement of image volumes [abstract]. Presented at the 9th International Conference on Functional Mapping of the Human Brain, June 19-22, 2003, New York, NY. Available on CD-Rom in NeuroImage Vol 19 No 2. [abstract]