INC Publications: Year 8

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YEAR 8 PUBLICATIONS

Peer-reviewed Papers | Book Chapters and Proceedings Papers | Abstracts

Published, in Press, and Submitted Peer-reviewed Papers

Boesen K, Rehm K, Schaper K, Stoltzner S, Woods R, Lüders E, Rottenberg D. Quantitative comparison of four brain extraction algorithms. NeuroImage 22(3): 1255-1261, 2004. [PubMed reference]

Fukuda M, Wang P, Moon C, Tanifuji M, Kim S-G. Spatial specificity of deoxyhemoglobin signal as studied by optical imaging of intrinsic signals. Proc Int Soc Mag Reson Med 11: 206, 2004.

Ratnanather JT, Barta PE, Honeycutt NA, Lee G, Morris HM, Dziorny AC, Hurdal MK, Pearlson GD, Miller MI. Dynamic programming generation of boundaries of local coordinatized submanifolds in the neocortex: application to the planum temporale. NeuroImage 20:359-377, 2003. [PubMed reference]

Rehm K, Schaper K, Anderson J, Woods R, Stoltzner S, Rottenberg D. Putting our heads together: a consensus approach to brain/non-brain segmentation in T1-weighted MR volumes. NeuroImage 22(3): 1262-1270, 2004. [PubMed reference]

Sidtis JJ, Strother SC, Rottenberg DA. Predicting performance from functional imaging data: methods matter. NeuroImage 20:615-624, 2003. [PubMed reference]

Sidtis JJ, Strother SC, Rottenberg DA. The effect of set on the resting state in functional neuroimaging: a role for the striatum? NeuroImage, 22:1407-1413, 2004. [PubMed reference]

Strother SC, LaConte S, Hansen LK, Anderson J, Zhang J, Pulapura S, Rottenberg D. Optimizing the fMRI data-processing pipeline using prediction and reproducibility performance metrics. NeuroImage 23 Suppl 1:S196-207, 2004. [PubMed reference]

Wang P, Zhao F, Kim S-G. Dependence of CBV-weighted fMRI signals on dose of contrast agents. Proc Int Soc Mag Reson Med 11: 1017, 2004.

Xue Z, Shen D, Davatzikos C. Determining correspondence in 3D MR brain images using attribute vectors as morphological signatures of voxels, revision submitted to IEEE TMI, March 2004.

Xue Z, Shen D, Davatzikos C. Correspondence detection using wavelet-based attribute vectors. Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2003, November 16-18, Montreal, Canada.

Zhao F, Wang P, Kim S-G. Cortical depth-dependent gradient-echo and spin-echo BOLD fMRI at 9.4T. Magn Reson Med 51: 518-524, 2004. [PubMed reference]

Zhao F, Wang P, Kim S-G. Cortical depth-related Functional R2 and R2* changes at 9.4T. Proc Int Soc Mag Reson Med 11: 270, 2004.

Zhao F, Wang P, Ugurbil K, Kim S-G. Cortical layer-dependent Basal CBV and stimulation-induced CBV responses. Proc Int Soc Mag Reson Med 11: 201, 2004.

Book Chapters and Refereed Proceedings Papers

Bowers PL and Hurdal MK. Planar Conformal Mappings of Piecewise Flat Surfaces. In H.-C. Hege and K. Polthier (eds), Visualization and Mathematics III, Berlin, Springer Verlag, pp. 3-34, 2003.

Calhourn VD, Adali T, Hansen LK, Larsen J, Pekar JJ. ICA of Functional MRI Data: An Overview. Invited review paper for Fourth International Symposium on Independent Component Analysis and Blind Source Separation, Nara, Japan, April 1-4, 281-288, 2003.

Hansen LK, Purushotham A, Kim SG. Testing competing hypotheses about single trial fMRI. Explorative methods in Neuroimaging (Ed.) F. Sommer, MIT Publishing Co., Chap 3: 49-62 2003.

Ju L, Stern J, Rehm K, Schaper K, Hurdal M, Rottenberg D. Cortical surface flattening using least square conformal mapping with minimal metric distortion. Proceedings of the 2004 IEEE Symposium on Biomedical Imaging, pp. 77-80.

Lange O, Meyer-Baese A, Wismueller A, Hurdal M, Sumners DW, Auer D. Tree-dependent and topographic independent component analysis for functional MRI analysis. Proceedings of SPIE, Volume 5439, 2004.

Lange O, Meyer-Baese A, Wismueller A, Hurdal M, Sumners DW, Auer D. Model-free functional MRI analysis using improved fuzzy cluster analysis techniques. Proceedings of SPIE, Volume 5421, 2004.

Lukic AS, Wernick MN, Galatsanos NP, Yongyi Y, Strother SC. Reversible jump Markov Chain Monte Carlo signal detection in functional neuroimaging analysis. IEEE Int. Symp. on Biomedical Imaging, Washington, DC, July 2004.

Otto TD, Meyer-Baese A, Hurdal H, Sumners DW, Wismuller A, Auer D. Model-Free Functional MRI Analysis Using Transformation-Based Methods. In AJ Bell, MV Wickerhauser and HH Szu (eds), Independent Component Analysis, Wavelets, and Neural Networks, Proceedings of SPIE, Volume 5102, pp. 156-167, 2003.

Otto TD, Meyer-Baese A, Hurdal H, Sumners DW, Wismuller A, Auer D. Model-Free Functional MRI Analysis Using Cluster-Based Methods. In KL Priddy and PJ Angeline (eds), Intelligent Computing: Theory and Applications, Proceedings of SPIE, Volume 5103, pp. 17-24, 2003.

Abstracts

Chen X, Pulapura S, Hansen LK, Zhang J, Anderson J, Strother SC. Comparison of activiation detection methods for fMRI using ROC curves. NeuroImage 22 CD-ROM Abstract #1500, 2004.

Cox RW, Ashburner J, Breman H, Fissell K, Haselgrove C, Holmes CJ, Lancaster JL, Rex DE, Smith SM, Woodward JB, Strother SC. A (Sort of) new image data format standard: NifTI-1. Neuroimage 22 CD-ROM Abstract #99, 2004.

Dyrholm M, Hansen LK, Wang L, Arendt-Nielsen L, Chen ACN. Convolutive ICA (c-ICA) captures complex spatio-temporal EEG activity. Neuroimage 22 CD-ROM Abstract #951, 2004.

Hurdal MK. Automated topological correction of cortical surfaces. NeuroImage 22 CD-ROM Abstract #1404, 2004.

Ju L, Hurdal MK, Rehm K, Wood B, Schaper K, Stern J, Rottenberg D. Evaluation of three cortical surface flattening methods. NeuroImage 22 CD-ROM Abstract #1422, 2004.

Nielsen FB, Hansen LK, Strother SC. Probabilistic Partial Least Squares: How Many Factors? NeuroImage 22 CD-ROM Abstract #1501, 2004.

Nielsen FÅ, Hansen LK. Assessing the reproducibility in sets of Talairach coordinates. NeuroImage 22 CD-ROM Abstract #1289, 2004.

Nielsen FÅ, Balsev D, Hansen LK. Mining Posterior Cingulate. NeuroImage 22 CD-ROM Abstract #78, 2004.

Rehm K, Strother SC, Anderson JR, Woods RP, Rottenberg DA. Multi-variate analysis: a tool for examining influences of mask and polynomial order on non-linear registration of T1-MRI volumes. NeuroImage 22 CD-ROM Abstract #661, 2004.

Rehm K, Ju L, Stern J, Schaper K, Rottenberg DA. ParcelMan and Pigment: interactive tools for parcellation of cortical grey matter. NeuroImage 22 CD-ROM Abstract #177, 2004.

Schaper KA, Jarvis TR, Boesen K, Rehm K, Gati J, Menon R, Rottenberg DA. Quantitative evaluation of MRI brain segmentation algorithms. NeuroImage 22 CD-ROM Abstract #1567, 2004.

Zhang J, Anderson J, LaConte S, Hansen LK, Strother SC. Exploring the Optimization of fMRI Processing Pipelines within the NPAIRS Framework. NeuroImage 22 CD-ROM Abstract #1673, 2004.